Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs11160679 chr14:102887621 A/G 7.46E-5 184 12.2 13.58 12.77 KM Plot
ESCA rs111688694 chr8:120869218 G/GCAT 4.88E-7 181 13 18.6 3.73 KM Plot
ESCA rs111699285 chr9:100606185 C/T 1.36E-8 181 13.03 21.07 2.67 KM Plot
ESCA rs111878571 chr19:5059354 G/A 3.12E-6 182 13.1 14.82 2.93 KM Plot
ESCA rs112050713 chr7:111251995 T/C 0 183 13.35 14.5 0.8 KM Plot
ESCA rs112133316 chr9:90916109 G/C 6.42E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs112185420 chr8:2452092 A/G 1.6E-9 180 13.33 14.15 2.93 KM Plot
ESCA rs112198122 chr22:19165997 G/A 9.2E-5 180 13.4 13.03 2.7 KM Plot
ESCA rs112248193 chr1:3718402 G/A 1.62E-5 180 12.9 18.47 3.73 KM Plot
ESCA rs112279447 chr3:10163420 C/CTT 1.84E-7 179 13.02 17.38 4.37 KM Plot
ESCA rs1122966 chr4:10014476 G/A 1.37E-5 182 13.07 14.13 7.93 KM Plot
ESCA rs11231545 chr11:63413028 G/C 2.7E-7 180 3.7 18.9 13 KM Plot
ESCA rs112407800 chr7:111257029 A/G 0 183 13.35 14.5 0.8 KM Plot
ESCA rs112467036 chr9:90915930 A/G 6.42E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs112562366 chr15:65592899 C/T 6.56E-5 181 12.9 16.53 4.08 KM Plot